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view test-data/test2_retrieve.gff @ 0:48522382b6a4 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/uniprot_rest_interface commit 2b8ad1bbfe098129ae32cd8311a755dff58ae97b-dirty
author bgruening
date Fri, 09 Oct 2015 16:42:22 -0400
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children cd2a41c65447
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##gff-version 3
##sequence-region S0DS17 1 369
##sequence-region M5BAG7 1 563
##sequence-region A0A077Z587 1 772
##sequence-region A0A077ZFY8 1 973
##sequence-region O14639 1 778
O14639	UniProtKB	Chain	1	778	.	.	.	ID=PRO_0000075697;Note=Actin-binding LIM protein 1	
O14639	UniProtKB	Domain	97	156	.	.	.	Note=LIM zinc-binding 1;evidence=ECO:0000255|PROSITE-ProRule:PRU00125	
O14639	UniProtKB	Domain	156	216	.	.	.	Note=LIM zinc-binding 2;evidence=ECO:0000255|PROSITE-ProRule:PRU00125	
O14639	UniProtKB	Domain	224	283	.	.	.	Note=LIM zinc-binding 3;evidence=ECO:0000255|PROSITE-ProRule:PRU00125	
O14639	UniProtKB	Domain	283	343	.	.	.	Note=LIM zinc-binding 4;evidence=ECO:0000255|PROSITE-ProRule:PRU00125	
O14639	UniProtKB	Domain	710	778	.	.	.	Note=HP;evidence=ECO:0000255|PROSITE-ProRule:PRU00595	
O14639	UniProtKB	Coiled coil	590	614	.	.	.	evidence=ECO:0000255	
O14639	UniProtKB	Modified residue	367	367	.	.	.	Note=Phosphoserine;evidence=ECO:0000244|PubMed:19690332	
O14639	UniProtKB	Modified residue	373	373	.	.	.	Note=Phosphotyrosine;evidence=ECO:0000244|PubMed:19690332	
O14639	UniProtKB	Modified residue	396	396	.	.	.	Note=Phosphotyrosine;evidence=ECO:0000244|PubMed:15592455	
O14639	UniProtKB	Modified residue	426	426	.	.	.	Note=Phosphoserine;evidence=ECO:0000244|PubMed:19690332,ECO:0000244|PubMed:24275569	
O14639	UniProtKB	Modified residue	431	431	.	.	.	Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:19690332	
O14639	UniProtKB	Modified residue	433	433	.	.	.	Note=Phosphothreonine;evidence=ECO:0000244|PubMed:19690332	
O14639	UniProtKB	Modified residue	435	435	.	.	.	Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:19690332,ECO:0000244|PubMed:20068231,ECO:0000244|PubMed:21406692,ECO:0000244|PubMed:24275569	
O14639	UniProtKB	Modified residue	439	439	.	.	.	Note=Phosphotyrosine;evidence=ECO:0000244|PubMed:15144186	
O14639	UniProtKB	Modified residue	455	455	.	.	.	Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:24275569	
O14639	UniProtKB	Modified residue	458	458	.	.	.	Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648	
O14639	UniProtKB	Modified residue	587	587	.	.	.	Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648	
O14639	UniProtKB	Modified residue	640	640	.	.	.	Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648,ECO:0000244|PubMed:20068231	
O14639	UniProtKB	Modified residue	655	655	.	.	.	Note=Phosphoserine;evidence=ECO:0000244|PubMed:18669648	
O14639	UniProtKB	Modified residue	706	706	.	.	.	Note=Phosphoserine;evidence=ECO:0000244|PubMed:24275569	
O14639	UniProtKB	Alternative sequence	1	316	.	.	.	ID=VSP_012099;Note=In isoform 3%2C isoform 4 and isoform 5.;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:17974005	
O14639	UniProtKB	Alternative sequence	1	81	.	.	.	ID=VSP_012100;Note=In isoform 2 and isoform 6.;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:7584044	
O14639	UniProtKB	Alternative sequence	347	347	.	.	.	ID=VSP_041185;Note=In isoform 5 and isoform 6.;evidence=ECO:0000303|PubMed:14702039	
O14639	UniProtKB	Alternative sequence	348	373	.	.	.	ID=VSP_012101;Note=In isoform 4.;evidence=ECO:0000303|PubMed:15489334	
O14639	UniProtKB	Alternative sequence	480	514	.	.	.	ID=VSP_012102;Note=In isoform 3%2C isoform 4 and isoform 5.;evidence=ECO:0000303|PubMed:14702039,ECO:0000303|PubMed:15489334,ECO:0000303|PubMed:17974005	
O14639	UniProtKB	Alternative sequence	531	531	.	.	.	ID=VSP_057209;Note=In isoform 6.;evidence=ECO:0000303|PubMed:14702039	
O14639	UniProtKB	Natural variant	434	434	.	.	.	ID=VAR_050141;Dbxref=dbSNP:rs11593544	
O14639	UniProtKB	Natural variant	637	637	.	.	.	ID=VAR_050142;Dbxref=dbSNP:rs7091419	
O14639	UniProtKB	Sequence conflict	499	499	.	.	.	evidence=ECO:0000305	
O14639	UniProtKB	Sequence conflict	532	532	.	.	.	evidence=ECO:0000305	
O14639	UniProtKB	Sequence conflict	563	563	.	.	.	evidence=ECO:0000305	
O14639	UniProtKB	Sequence conflict	578	578	.	.	.	evidence=ECO:0000305	
##sequence-region M5B8V9 1 582
##sequence-region A0A077ZHN8 1 634
##sequence-region Q0P8A9 1 310
##sequence-region Q13685 1 434
Q13685	UniProtKB	Chain	1	434	.	.	.	ID=PRO_0000050832;Note=Angio-associated migratory cell protein	
Q13685	UniProtKB	Repeat	89	129	.	.	.	Note=WD 1	
Q13685	UniProtKB	Repeat	132	171	.	.	.	Note=WD 2	
Q13685	UniProtKB	Repeat	173	212	.	.	.	Note=WD 3	
Q13685	UniProtKB	Repeat	214	254	.	.	.	Note=WD 4	
Q13685	UniProtKB	Repeat	258	299	.	.	.	Note=WD 5	
Q13685	UniProtKB	Repeat	315	354	.	.	.	Note=WD 6	
Q13685	UniProtKB	Repeat	356	395	.	.	.	Note=WD 7	
Q13685	UniProtKB	Repeat	398	433	.	.	.	Note=WD 8	
Q13685	UniProtKB	Compositional bias	53	59	.	.	.	Note=Poly-Glu	
Q13685	UniProtKB	Modified residue	20	20	.	.	.	Note=Phosphoserine;evidence=ECO:0000244|PubMed:24275569	
Q13685	UniProtKB	Natural variant	250	250	.	.	.	ID=VAR_037061;Dbxref=dbSNP:rs2305835