# HG changeset patch
# User bgruening
# Date 1537119668 14400
# Node ID 054483e27a35a6bf9b5e0ca3a8d217384774d7bb
# Parent  f7ebd1b4783bd4536065b24df58c522c88187982
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/uniprot_rest_interface commit f7a71c09b68d85a73a7ce761b4e64d5de29daee0

diff -r f7ebd1b4783b -r 054483e27a35 uniprot.xml
--- a/uniprot.xml	Sat Sep 15 10:23:35 2018 -0400
+++ b/uniprot.xml	Sun Sep 16 13:41:08 2018 -0400
@@ -1,20 +1,20 @@
-<tool id="uniprot" name="UniProt" version="0.1">
+<tool id="uniprot" name="UniProt" version="0.2">
     <description>ID mapping and retrieval</description>
     <macros>
          <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="2.7">requests</requirement>
+        <requirement type="package" version="2.19.1">requests</requirement>
     </requirements>
     <version_command>echo "UniProt ID mapping for Galaxy in version 0.1"</version_command>
     <command detect_errors="aggressive"><![CDATA[
 
-        cut -f ${id_column} $infile > id_file.tabular &&
+        cut -f ${id_column} '$infile' > id_file.tabular &&
 
-        $__tool_directory__/uniprot.py
+        '$__tool_directory__/uniprot.py'
 
         #if $tool.tool_choice == "retrieve":
-            retrieve -f $tool.format $infile ./output
+            retrieve -f $tool.format id_file.tabular ./output
         #elif $tool.tool_choice == "map":
             map