comparison macros.xml @ 2:2668027a533b draft default tip

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/wtdbg commit 05f8373310ce1728426b89f33b643406e0cba54b"

1:e100f3f4d80e

<macros>
    <xml name="requirements">
        <requirements>
        <requirement type="package" version="2.0">wtdbg</requirement>
            <yield/>
        </requirements>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="bibtex">
@misc{githubwtdbg-2,
  author = {Ruan, Jue},
  year = {2018},
  title = {wtdbg-2},
  publisher = {GitHub},
  journal = {GitHub repository},
  url = {https://github.com/ruanjue/wtdbg2},
}</citation>
            <yield />
        </citations>
    </xml>
</macros>

2:2668027a533b

<macros>
    <token name="@TOOL_VERSION@">2.5</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <xml name="citations">
        <citations>
            <citation type="doi">doi:10.1038/s41592-019-0669-3</citation>
        </citations>
    </xml>
    <token name="@ASM_OPTIONS@">
        -X $asm.X
        -L $asm.L
        -k $asm.k
        -p $asm.p
        -K $asm.K
        -s $asm.s
        -e $asm.e
        $asm.realign
        $asm.contained_reads
    </token>
    <token name="@CNS_OPTIONS@">
        -j $cns.j
        -M $cns.M
        -X $cns.X
        -I $cns.I
        -D $cns.D
        -b $cns.b
        -H $cns.H
        -B $cns.B
        -W $cns.W
        -w $cns.w
        -A $cns.A
        -S $cns.S
        -R $cns.R
        -c $cns.c
        -C $cns.C
        -F $cns.F
        -N $cns.N
    </token>
</macros>