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4
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
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5 </set_environment>
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6
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13
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7 <package name="R" version="3.0.1">
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14
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8 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True"/>
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4
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9
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10 <install version="1.0">
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11 <actions>
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12 <action type="set_environment_for_install">
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14
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13 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True">
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6
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14 <package name="R" version="3.0.1" />
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4
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15 </repository>
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16 </action>
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17 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
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22
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18 <action type="shell_command">echo "export PATH=$PATH" > $INSTALL_DIR/env.sh </action>
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19 <action type="shell_command">chmod 755 $INSTALL_DIR/env.sh </action>
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14
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20
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19
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21 </actions>
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4
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22 </install>
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23 </package>
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24
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25
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26 </tool_dependency>
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