Mercurial > repos > big-tiandm > degseq
comparison DEGseq_2.pl @ 7:736f53de6964 draft
Uploaded
author | big-tiandm |
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date | Fri, 14 Nov 2014 04:05:45 -0500 |
parents | 0e63c50295bc |
children | 9c8c0fdb1717 |
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6:2cdd651b4d01 | 7:736f53de6964 |
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42 else{ | 42 else{ |
43 print OUT "DEGexp(geneExpMatrix1=geneExpMatrix1, geneCol1=1, expCol1=c(2), groupLabel1=\"$mark1\",geneExpMatrix2=geneExpMatrix2, geneCol2=1, expCol2=c(2), groupLabel2=\"$mark2\",outputDir=outputdir,method=\"MARS\")\n"; | 43 print OUT "DEGexp(geneExpMatrix1=geneExpMatrix1, geneCol1=1, expCol1=c(2), groupLabel1=\"$mark1\",geneExpMatrix2=geneExpMatrix2, geneCol2=1, expCol2=c(2), groupLabel2=\"$mark2\",outputDir=outputdir,method=\"MARS\")\n"; |
44 } | 44 } |
45 close OUT; | 45 close OUT; |
46 | 46 |
47 print LOG "Prepare for DEGseq!\t"; | |
48 print LOG `date`; | |
49 print LOG "\n"; | |
50 | 47 |
51 system("R CMD BATCH $fileout"); | 48 system("R CMD BATCH $fileout"); |
52 | 49 |
53 wait; | 50 wait; |
54 | 51 |