Mercurial > repos > big-tiandm > degseq
comparison tool_dependencies.xml @ 10:8211c40fcb3c draft
Uploaded
| author | big-tiandm |
|---|---|
| date | Fri, 14 Nov 2014 20:57:28 -0500 |
| parents | 2cdd651b4d01 |
| children | bd59a7d791b5 |
comparison
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| 9:7a94f0a9f1c4 | 10:8211c40fcb3c |
|---|---|
| 2 <tool_dependency> | 2 <tool_dependency> |
| 3 <set_environment version="1.0"> | 3 <set_environment version="1.0"> |
| 4 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> | 4 <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> |
| 5 </set_environment> | 5 </set_environment> |
| 6 | 6 |
| 7 <package name="R" version="3.0.1"> | 7 <!--package name="R" version="3.0.1"> |
| 8 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> | 8 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 9 </package> | 9 </package> |
| 10 | 10 |
| 11 <package name="degseq" version="1.20.0"> | 11 <package name="degseq" version="1.20.0"> |
| 12 <install version="1.0"> | 12 <install version="1.0"> |
| 19 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action> | 19 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action> |
| 20 </actions> | 20 </actions> |
| 21 </install> | 21 </install> |
| 22 | 22 |
| 23 | 23 |
| 24 </package!--> | |
| 25 | |
| 26 | |
| 27 <package name="R" version="3.0.1"> | |
| 28 <install version="1.0"> | |
| 29 <actions> | |
| 30 <action type="set_environment_for_install"> | |
| 31 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu"> | |
| 32 <package name="R" version="3.0.1" /> | |
| 33 </repository> | |
| 34 </action> | |
| 35 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action> | |
| 36 </actions> | |
| 37 </install> | |
| 38 | |
| 39 | |
| 24 </package> | 40 </package> |
| 25 | 41 |
| 26 | 42 |
| 27 </tool_dependency> | 43 </tool_dependency> |