Mercurial > repos > big-tiandm > degseq

comparison tool_dependencies.xml @ 22:b5b3d44170ca draft default tip

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author big-tiandm
date Sat, 15 Nov 2014 01:05:05 -0500
parents 94bc6d663e36
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21:94bc6d663e36 22:b5b3d44170ca
13 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True"> 13 <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True">
14 <package name="R" version="3.0.1" /> 14 <package name="R" version="3.0.1" />
15 </repository> 15 </repository>
16 </action> 16 </action>
17 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action> 17 <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
18 <action type="shell_command">RPATH=`which R`</action> 18 <action type="shell_command">echo "export PATH=$PATH" > $INSTALL_DIR/env.sh </action>
19 <action type="shell_command">echo "export PATH=$RPATH:$PATH" \> $INSTALL_DIR/env.sh </action> 19 <action type="shell_command">chmod 755 $INSTALL_DIR/env.sh </action>
20 <action type="shell_command">chmod 755 SINSTALL_DIR/env.sh </action>
21 20
22 </actions> 21 </actions>
23 </install> 22 </install>
24 </package> 23 </package>
25 24