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view tool_dependencies.xml @ 4:5d8069b349e5 draft

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author big-tiandm
date Thu, 30 Oct 2014 03:14:12 -0400
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children 2cdd651b4d01
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<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
    </set_environment>

	<package name="R" version="2.11.0">
	   <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
	</package>

	<package name="degseq" version="1.20.0">
		<install version="1.0">
		   <actions>
		      <action type="set_environment_for_install">
                    <repository changeset_revision="5824d2b3bc8b" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu">
                        <package name="R" version="2.11.0" />
                    </repository>
              </action>
		      <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
		   </actions>
		</install>


	</package>


</tool_dependency>