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view tool_dependencies.xml @ 13:96961ac4f745 draft

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author big-tiandm
date Fri, 14 Nov 2014 21:24:56 -0500
parents bd59a7d791b5
children e10ada1be34d
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<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
    </set_environment>

	<package name="R" version="3.0.1">
	   <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
	</package>

	<package name="degseq" version="1.20.0">
		<install version="1.0">
		   <actions>
		      <action type="set_environment_for_install">
                    <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
                        <package name="R" version="3.0.1" />
                    </repository>
              </action>
		      <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
		   </actions>
		</install>


	</package>



</tool_dependency>