# HG changeset patch
# User big-tiandm
# Date 1416024073 18000
# Node ID e10ada1be34d874fedd98c5ac2b7f59e3007b042
# Parent  96961ac4f7456f980fa9e20b8742222bd36e8e34
Uploaded

diff -r 96961ac4f745 -r e10ada1be34d tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Nov 14 21:24:56 2014 -0500
+++ b/tool_dependencies.xml	Fri Nov 14 23:01:13 2014 -0500
@@ -5,18 +5,25 @@
     </set_environment>
 
 	<package name="R" version="3.0.1">
-	   <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
+	   <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True"/>
 	</package>
 
 	<package name="degseq" version="1.20.0">
 		<install version="1.0">
 		   <actions>
 		      <action type="set_environment_for_install">
-                    <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True">
                         <package name="R" version="3.0.1" />
                     </repository>
               </action>
 		      <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
+
+			  <action type="shell_command">RPATH=`which R` </action>
+
+			  <action type="set_environment">
+                 <environment_variable name="PATH" action="prepend_to">$RPATH</environment_variable>
+              </action>
+		   
 		   </actions>
 		</install>