Mercurial > repos > big-tiandm > mirplant2
diff rfam.pl @ 44:0c4e11018934 draft
Uploaded
author | big-tiandm |
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date | Thu, 30 Oct 2014 21:29:19 -0400 |
parents | 9ae0d25e4169 |
children | c75593f79aa9 |
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--- a/rfam.pl Tue Oct 28 01:35:32 2014 -0400 +++ b/rfam.pl Thu Oct 30 21:29:19 2014 -0400 @@ -47,7 +47,7 @@ $index="$rfam"; } ### genome mapping -`bowtie -v $mis -f -p $threads -k 1 $index $filein --al rfam_mapped.fa --un rfam_not_mapped.fa > rfam_mapped.bwt`; +`bowtie -v $mis -f -p $threads -k 1 $index $filein --al rfam_mapped.fa --un rfam_not_mapped.fa > rfam_mapped.bwt 2> run.log`; sub checkACGT{ my $string;