Mercurial > repos > big-tiandm > mirplant2
changeset 42:3b9a6381e6bf draft
Uploaded
author | big-tiandm |
---|---|
date | Tue, 28 Oct 2014 01:35:17 -0400 |
parents | 58b9d9a0d832 |
children | 4c0b1a94b882 |
files | tool_dependencies.xml |
diffstat | 1 files changed, 13 insertions(+), 8 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue Oct 28 01:33:17 2014 -0400 +++ b/tool_dependencies.xml Tue Oct 28 01:35:17 2014 -0400 @@ -1,10 +1,10 @@ <?xml version="1.0"?> <tool_dependency> <package name="fastx_toolkit" version="0.0.13"> - <repository changeset_revision="ec66ae4c269b" name="package_fastx_toolkit_0_0_13" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="ec66ae4c269b" name="package_fastx_toolkit_0_0_13" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <package name="bowtie" version="0.12.7"> - <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> <set_environment version="1.0"> <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> @@ -12,17 +12,22 @@ <package name="R" version="2.11.0"> <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> </package> - <package name="ViennaRNA" version="2.1.7"> - <!--install version="1.0"> + + <package name="X11" version="1.5.0"> + <repositoty name="package_libx11_1_5_0" owner="devteam" /> + </package> + + <package name="ViennaRNA" version="2.1.8"> + <install version="1.0"> <actions> - <action type="download_by_url">http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.7.tar.gz</action> - <action type="shell_command">./configure</action> + <action type="download_by_url">http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.1.8.tar.gz</action> + <action type="shell_command">./configure --prefix=$INSTALL_DIR </action> <action type="shell_command">make</action> <action type="shell_command">make install</action> <action type="set_environment"> - <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> </action> </actions> - </install--> + </install> </package> </tool_dependency>