Mercurial > repos > big-tiandm > sirna_plant

diff tool_dependencies.xml @ 2:911a4581f480 draft

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Uploaded
author big-tiandm
date Thu, 23 Oct 2014 21:35:28 -0400
parents 07745c0958dd
children
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Sep 18 21:43:28 2014 -0400
+++ b/tool_dependencies.xml	Thu Oct 23 21:35:28 2014 -0400
@@ -12,4 +12,62 @@
     <package name="R" version="2.11.0">
         <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
     </package>
+
+	<package name="threads" version="1.96">
+	   <install version="1.0">
+		   <actions>
+		     <action type="download_by_url">http://www.cpan.org/authors/id/J/JD/JDHEDDEN/threads-1.96.tar.gz</action>
+			 <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR </action>
+			 <action type="shell_command">make</action>
+			 <action type="shell_command">make install</action>
+			 <action type="set_environment">
+			   <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable>
+			 </action>
+		   </actions>
+	   </install>
+	</package>
+
+
+	<package name="Parallel-ForkManager" version="1.06">
+	   <install version="1.0">
+		   <actions>
+		     <action type="download_by_url">http://www.cpan.org/authors/id/S/SZ/SZABGAB/Parallel-ForkManager-1.06.tar.gz</action>
+			 <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR </action>
+			 <action type="shell_command">make</action>
+			 <action type="shell_command">make install</action>
+			 <action type="set_environment">
+			   <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable>
+			 </action>
+		   </actions>
+	   </install>
+	</package>
+
+	<package name="SVG" version="2.59">
+	   <install version="1.0">
+		   <actions>
+		     <action type="download_by_url">http://www.cpan.org/authors/id/S/SZ/SZABGAB/SVG-2.59.tar.gz</action>
+			 <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR </action>
+			 <action type="shell_command">make</action>
+			 <action type="shell_command">make install</action>
+			 <action type="set_environment">
+			   <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable>
+			 </action>
+		   </actions>
+	   </install>
+	</package>
+
+	<package name="Boost-Graph" version="1.4">
+	   <install version="1.0">
+		   <actions>
+		     <action type="download_by_url">http://www.cpan.org/authors/id/D/DB/DBURDICK/BoostGraph/Boost-Graph-1.4.tar.gz</action>
+			 <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR </action>
+			 <action type="shell_command">make</action>
+			 <action type="shell_command">make install</action>
+			 <action type="set_environment">
+			   <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable>
+			 </action>
+		   </actions>
+	   </install>
+	</package>
+
 </tool_dependency>