# HG changeset patch
# User big-tiandm
# Date 1414570744 14400
# Node ID 318617877a107346bef205982aedfc0e582a1552
# Parent  a0222bdfe2ac8a7473d23f36e2a105496476766f
Uploaded

diff -r a0222bdfe2ac -r 318617877a10 rfam.pl
--- a/rfam.pl	Wed Oct 29 04:18:44 2014 -0400
+++ b/rfam.pl	Wed Oct 29 04:19:04 2014 -0400
@@ -42,7 +42,7 @@
 
 #chdir "rfam_match_1397022331";
 ### genome mapping
-`bowtie -v $mis -f -p $threads -k 1 $index $filein --al rfam_mapped.fa --un rfam_not_mapped.fa > rfam_mapped.bwt`;
+`bowtie -v $mis -f -p $threads -k 1 $index $filein --al rfam_mapped.fa --un rfam_not_mapped.fa > rfam_mapped.bwt 2> run.log`;
 
 sub checkACGT{
 	my $string;