# HG changeset patch
# User big-tiandm
# Date 1414118785 14400
# Node ID ccabcc236bb340139938eef37bac28d0566d4a48
# Parent  f466394ee1fd82d9942b3f2e19bc82358ca58c4d
Deleted selected files

diff -r f466394ee1fd -r ccabcc236bb3 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Oct 23 22:08:09 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,73 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-    <package name="fastx_toolkit" version="0.0.13">
-        <repository changeset_revision="ec66ae4c269b" name="package_fastx_toolkit_0_0_13" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="bowtie" version="0.12.7">
-        <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" />
-    </package>
-    <set_environment version="1.0">
-        <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
-    </set_environment>
-    <package name="R" version="2.11.0">
-        <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
-    </package>
-
-	<package name="threads" version="1.96">
-	   <install version="1.0">
-		   <actions>
-		     <action type="download_by_url">http://www.cpan.org/authors/id/J/JD/JDHEDDEN/threads-1.96.tar.gz</action>
-			 <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR </action>
-			 <action type="shell_command">make</action>
-			 <action type="shell_command">make install</action>
-			 <action type="set_environment">
-			   <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable>
-			 </action>
-		   </actions>
-	   </install>
-	</package>
-
-
-	<package name="Parallel-ForkManager" version="1.06">
-	   <install version="1.0">
-		   <actions>
-		     <action type="download_by_url">http://www.cpan.org/authors/id/S/SZ/SZABGAB/Parallel-ForkManager-1.06.tar.gz</action>
-			 <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR </action>
-			 <action type="shell_command">make</action>
-			 <action type="shell_command">make install</action>
-			 <action type="set_environment">
-			   <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable>
-			 </action>
-		   </actions>
-	   </install>
-	</package>
-
-	<package name="SVG" version="2.59">
-	   <install version="1.0">
-		   <actions>
-		     <action type="download_by_url">http://www.cpan.org/authors/id/S/SZ/SZABGAB/SVG-2.59.tar.gz</action>
-			 <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR </action>
-			 <action type="shell_command">make</action>
-			 <action type="shell_command">make install</action>
-			 <action type="set_environment">
-			   <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable>
-			 </action>
-		   </actions>
-	   </install>
-	</package>
-
-	<package name="Boost-Graph" version="1.4">
-	   <install version="1.0">
-		   <actions>
-		     <action type="download_by_url">http://www.cpan.org/authors/id/D/DB/DBURDICK/BoostGraph/Boost-Graph-1.4.tar.gz</action>
-			 <action type="shell_command">perl Makefile.PL PREFIX=$INSTALL_DIR </action>
-			 <action type="shell_command">make</action>
-			 <action type="shell_command">make install</action>
-			 <action type="set_environment">
-			   <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib</environment_variable>
-			 </action>
-		   </actions>
-	   </install>
-	</package>
-
-</tool_dependency>