Mercurial > repos > big-tiandm > sirna_plant

changeset 33:09fefe8db1d0 draft default tip

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Uploaded
author big-tiandm
date Sat, 15 Nov 2014 01:33:45 -0500
parents 399d8dbdedd6
children
files tool_dependencies.xml
diffstat 1 files changed, 7 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Sat Nov 15 01:33:20 2014 -0500
+++ b/tool_dependencies.xml	Sat Nov 15 01:33:45 2014 -0500
@@ -9,20 +9,22 @@
     <set_environment version="1.0">
         <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
     </set_environment>
+
 	<package name="R" version="3.0.1">
-	   <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" />
-	</package>
+	   <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True"/>
 
-	<package name="degseq" version="1.20.0">
 		<install version="1.0">
 		   <actions>
 		      <action type="set_environment_for_install">
-                    <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="c5ff6dd33c79" name="package_r_3_0_1" owner="iuc" toolshed="http://toolshed.g2.bx.psu.edu" prior_installation_required="True">
                         <package name="R" version="3.0.1" />
                     </repository>
               </action>
 		      <action type="shell_command">R CMD BATCH $REPOSITORY_INSTALL_DIR/install_DEG.R </action>
-		   </actions>
+		      <action type="shell_command">echo "export PATH=$PATH" > $INSTALL_DIR/env.sh </action>
+			  <action type="shell_command">chmod 755 $INSTALL_DIR/env.sh </action>
+
+		 </actions>
 		</install>
 	</package>