comparison COBRAxy/metabolicModel2Tabular.py @ 502:054c872e3880 draft

Uploaded

501:9bfd1ec3ae6f

            target_nomenclature=ARGS.gene_format,
            source_nomenclature='HGNC_symbol',
            logger=logger
        )

    if ARGS.name == "Custom_model" and ARGS.gene_format != "Default":
        logging.basicConfig(level=logging.INFO)
        logger = logging.getLogger(__name__)

        # Take a small, clean sample of gene IDs (skipping placeholders like 0)
        ids_sample = sample_valid_gene_ids(model.genes, limit=10)

502:054c872e3880

            target_nomenclature=ARGS.gene_format,
            source_nomenclature='HGNC_symbol',
            logger=logger
        )

    if ARGS.input and ARGS.gene_format != "Default":
        logging.basicConfig(level=logging.INFO)
        logger = logging.getLogger(__name__)

        # Take a small, clean sample of gene IDs (skipping placeholders like 0)
        ids_sample = sample_valid_gene_ids(model.genes, limit=10)