comparison COBRAxy/src/flux_simulation.py @ 552:0b3e3678ea95 draft default tip

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551:d45a37837ffa

                        required=False,
                        help='output type analysis (optimization methods)')

    parser.add_argument('-idop', '--output_path',
                        type=str,
                        default='flux_simulation/',
                        help = 'output path for fluxes')
    
    parser.add_argument('-otm', '--out_mean',
                    type = str,
                    required=False,

    num_processors = max(1, cpu_count() - 1)

    global ARGS
    ARGS = process_args(args)

    if not os.path.exists('flux_simulation'):
        os.makedirs('flux_simulation')

    # --- Read input files and names from the provided file paths ---
    with open(ARGS.input_file, 'r') as f:
        ARGS.input_files = [line.strip() for line in f if line.strip()]
    

552:0b3e3678ea95

                        required=False,
                        help='output type analysis (optimization methods)')

    parser.add_argument('-idop', '--output_path',
                        type=str,
                        default='flux_simulation',
                        help = 'output path for fluxes')
    
    parser.add_argument('-otm', '--out_mean',
                    type = str,
                    required=False,

    num_processors = max(1, cpu_count() - 1)

    global ARGS
    ARGS = process_args(args)

    if not os.path.exists(ARGS.output_path):
        os.makedirs(ARGS.output_path)

    # --- Read input files and names from the provided file paths ---
    with open(ARGS.input_file, 'r') as f:
        ARGS.input_files = [line.strip() for line in f if line.strip()]