Mercurial > repos > bimib > cobraxy
comparison COBRAxy/marea.py @ 277:1bf66a30ab23 draft
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| author | francesco_lapi |
|---|---|
| date | Mon, 12 May 2025 15:36:25 +0000 |
| parents | 2748cef7fa12 |
| children | 5e8f1ab4242f |
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| 276:2748cef7fa12 | 277:1bf66a30ab23 |
|---|---|
| 765 | 765 |
| 766 # fallthrough is intended, regular scores need to be computed when tips aren't net but RAS datasets aren't used | 766 # fallthrough is intended, regular scores need to be computed when tips aren't net but RAS datasets aren't used |
| 767 p_value, z_score = computePValue(l1, l2) | 767 p_value, z_score = computePValue(l1, l2) |
| 768 avg = fold_change(sum(l1) / len(l1), sum(l2) / len(l2)) | 768 avg = fold_change(sum(l1) / len(l1), sum(l2) / len(l2)) |
| 769 if not isinstance(z_score, str) and max_z_score < abs(z_score): max_z_score = abs(z_score) | 769 if not isinstance(z_score, str) and max_z_score < abs(z_score): max_z_score = abs(z_score) |
| 770 tmp[reactId] = [float(p_value), avg, z_score] | 770 tmp[reactId] = [float(p_value), avg, z_score, sum(l1) / len(l1), sum(l2) / len(l2)] |
| 771 | 771 |
| 772 except (TypeError, ZeroDivisionError): continue | 772 except (TypeError, ZeroDivisionError): continue |
| 773 | 773 |
| 774 return tmp, max_z_score | 774 return tmp, max_z_score |
| 775 | 775 |