comparison COBRAxy/ras_to_bounds.py @ 108:22cebbdb4b6d draft

Uploaded

107:58919e82d96e

        pd.DataFrame: DataFrame containing the bounds of reactions in the model.
    """
    rxns_ids = [rxn.id for rxn in model.reactions]
    
    # Set medium conditions
    ''' 
    reactions_medium=model2.medium.keys()
        for reaction in reactions_medium:
            if(reaction != "EX_thbpt_e" and reaction != "EX_lac__L_e"):
                model2.reactions.get_by_id(reaction).lower_bound=-float(ras_meta.loc[cell,"countmatrix_"+reaction])
            if(reaction == "EX_lac__L_e"):
                model2.reactions.get_by_id(reaction).lower_bound=float(0.0)
    '''
    for reaction, value in medium.items():
        if value is not None:
            if(reaction != "EX_thbpt_e" and reaction != "EX_lac__L_e"):
                model.reactions.get_by_id(reaction).lower_bound = -float(value)
            if(reaction == "EX_lac__L_e"):

108:22cebbdb4b6d

        pd.DataFrame: DataFrame containing the bounds of reactions in the model.
    """
    rxns_ids = [rxn.id for rxn in model.reactions]
    
    # Set medium conditions
    for reaction, value in medium.items():
        if value is not None:
            if(reaction != "EX_thbpt_e" and reaction != "EX_lac__L_e"):
                model.reactions.get_by_id(reaction).lower_bound = -float(value)
            if(reaction == "EX_lac__L_e"):