comparison COBRAxy/marea.py @ 319:3730c835f475 draft

Uploaded

318:bfe98b0f04fc

    # this function compiles the things always in common between comparison modes after enrichment.
    # TODO: organize, name better.
    suffix = "RAS" if ras_enrichment else "RPS"
    writeToCsv(
        [ [reactId] + values for reactId, values in tmp.items() ],
        ["ids", "P_Value", "fold change", "average_1", "average_2"],
        buildOutputPath(dataset1Name, dataset2Name, details = f"Tabular Result ({suffix})", ext = utils.FileFormat.TSV))
    
    if ras_enrichment:
        fix_map(tmp, core_map, ARGS.pValue, ARGS.fChange, max_z_score)
        return

319:3730c835f475

    # this function compiles the things always in common between comparison modes after enrichment.
    # TODO: organize, name better.
    suffix = "RAS" if ras_enrichment else "RPS"
    writeToCsv(
        [ [reactId] + values for reactId, values in tmp.items() ],
        ["ids", "P_Value", "fold change", "z-score", "average_1", "average_2"],
        buildOutputPath(dataset1Name, dataset2Name, details = f"Tabular Result ({suffix})", ext = utils.FileFormat.TSV))
    
    if ras_enrichment:
        fix_map(tmp, core_map, ARGS.pValue, ARGS.fChange, max_z_score)
        return