comparison COBRAxy/rps_generator.py @ 326:3dccdf56cb24 draft

Uploaded

325:2aea7e27ae0f

        dict: A dictionary containing Reaction Propensity Scores (RPS) where keys are reaction names and values are the corresponding RPS scores.
    """
    rps_scores = {}

    for reaction_name, substrates in reactions.items():
        total_contribution = 1
        metab_significant  = False
        for metabolite, stoichiometry in substrates.items():
            abundance = 1 if math.isnan(abundances[metabolite]) else abundances[metabolite]
            if metabolite not in black_list and metabolite not in missing_list:
                metab_significant = True

326:3dccdf56cb24

        dict: A dictionary containing Reaction Propensity Scores (RPS) where keys are reaction names and values are the corresponding RPS scores.
    """
    rps_scores = {}

    for reaction_name, substrates in reactions.items():
        total_contribution = 0
        metab_significant  = False
        for metabolite, stoichiometry in substrates.items():
            abundance = 1 if math.isnan(abundances[metabolite]) else abundances[metabolite]
            if metabolite not in black_list and metabolite not in missing_list:
                metab_significant = True