Mercurial > repos > bimib > cobraxy
comparison COBRAxy/ras_to_bounds.py @ 61:455e8945d02a draft
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| author | luca_milaz |
|---|---|
| date | Sun, 13 Oct 2024 08:05:26 +0000 |
| parents | 547942aa1a93 |
| children | 14076662f687 |
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| 60:547942aa1a93 | 61:455e8945d02a |
|---|---|
| 224 ras.set_index("Reactions", drop=True, inplace=True) | 224 ras.set_index("Reactions", drop=True, inplace=True) |
| 225 ras = ras.T | 225 ras = ras.T |
| 226 ras = ras.astype(float) | 226 ras = ras.astype(float) |
| 227 ras_list.append(ras) | 227 ras_list.append(ras) |
| 228 for patient_id in ras.index: | 228 for patient_id in ras.index: |
| 229 class_assignments = pd.concat([class_assignments, pd.DataFrame({"Patient_ID": patient_id, "Class": ras_class_name})]) | 229 class_assignments.loc[class_assignments.shape[0]] = [patient_id, ras_class_name] |
| 230 | 230 |
| 231 | 231 |
| 232 # Concatenate all ras DataFrames into a single DataFrame | 232 # Concatenate all ras DataFrames into a single DataFrame |
| 233 ras_combined = pd.concat(ras_list, axis=1) | 233 ras_combined = pd.concat(ras_list, axis=1) |
| 234 # Normalize the RAS values by max RAS | 234 # Normalize the RAS values by max RAS |
