Mercurial > repos > bimib > cobraxy
comparison COBRAxy/ras_to_bounds.py @ 63:5302258f8262 draft
Uploaded
| author | luca_milaz |
|---|---|
| date | Sun, 13 Oct 2024 08:11:43 +0000 |
| parents | 14076662f687 |
| children | b10da5046afd |
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| 62:14076662f687 | 63:5302258f8262 |
|---|---|
| 121 for reaction in rxns_ids: | 121 for reaction in rxns_ids: |
| 122 if reaction in ras_row.index: | 122 if reaction in ras_row.index: |
| 123 scaling_factor = ras_row[reaction] | 123 scaling_factor = ras_row[reaction] |
| 124 lower_bound=model.reactions.get_by_id(reaction).lower_bound | 124 lower_bound=model.reactions.get_by_id(reaction).lower_bound |
| 125 upper_bound=model.reactions.get_by_id(reaction).upper_bound | 125 upper_bound=model.reactions.get_by_id(reaction).upper_bound |
| 126 warning("Reaction: "+reaction+" Lower Bound: "+str(lower_bound)+" Upper Bound: "+str(upper_bound)+" Scaling Factor: "+str(scaling_factor)) | |
| 126 valMax=float((upper_bound)*scaling_factor) | 127 valMax=float((upper_bound)*scaling_factor) |
| 127 valMin=float((lower_bound)*scaling_factor) | 128 valMin=float((lower_bound)*scaling_factor) |
| 128 if upper_bound!=0 and lower_bound==0: | 129 if upper_bound!=0 and lower_bound==0: |
| 129 model.reactions.get_by_id(reaction).upper_bound=valMax | 130 model.reactions.get_by_id(reaction).upper_bound=valMax |
| 130 if upper_bound==0 and lower_bound!=0: | 131 if upper_bound==0 and lower_bound!=0: |