comparison COBRAxy/src/ras_generator.py @ 544:540ab7dd1322 draft

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543:5d5583dc6082

Generate Reaction Activity Scores (RAS) from a gene expression dataset and GPR rules.

The script reads a tabular dataset (genes x samples) and a rules file (GPRs),
computes RAS per reaction for each sample/cell line, and writes a tabular output.
"""
import os
from __future__ import division
import sys
import argparse
import pandas as pd
import numpy as np
try:

544:540ab7dd1322

Generate Reaction Activity Scores (RAS) from a gene expression dataset and GPR rules.

The script reads a tabular dataset (genes x samples) and a rules file (GPRs),
computes RAS per reaction for each sample/cell line, and writes a tabular output.
"""
from __future__ import division
import os
import sys
import argparse
import pandas as pd
import numpy as np
try: