comparison COBRAxy/flux_to_map.py @ 187:5581ce89f15e draft

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186:f0197057876c

        return ReactionDirection.fromDir(reactionId[-2:])

def getArrowBodyElementId(reactionId :str) -> str:
    if reactionId.endswith("_RV"): reactionId = reactionId[:-3] #TODO: standardize _RV
    elif ReactionDirection.fromReactionId(reactionId) is not ReactionDirection.Unknown: reactionId = reactionId[:-2]
    if 'r1050' in reactionId:
        print(reactionId)
    return f"R_{reactionId}"

def getArrowHeadElementId(reactionId :str) -> Tuple[str, str]:
    """
    We attempt extracting the direction information from the provided reaction ID, if unsuccessful we provide the IDs of both directions.

        if getElementById(reactionId, metabMap).map(lambda el : styleMapElement(el, styleStr)).isErr:
            ERRORS.append(reactionId)

    def styleReactionElements(self, metabMap :ET.ElementTree, reactionId :str, *, mindReactionDir = True) -> None:
        if not mindReactionDir:
            return self.applyTo(getArrowBodyElementId(reactionId), metabMap, self.toStyleStr())
        
        # Now we style the arrow head(s):
        idOpt1, idOpt2 = getArrowHeadElementId(reactionId)
        self.applyTo(idOpt1, metabMap, self.toStyleStr(downSizedForTips = True))

187:5581ce89f15e

        return ReactionDirection.fromDir(reactionId[-2:])

def getArrowBodyElementId(reactionId :str) -> str:
    if reactionId.endswith("_RV"): reactionId = reactionId[:-3] #TODO: standardize _RV
    elif ReactionDirection.fromReactionId(reactionId) is not ReactionDirection.Unknown: reactionId = reactionId[:-2]
    return f"R_{reactionId}"

def getArrowHeadElementId(reactionId :str) -> Tuple[str, str]:
    """
    We attempt extracting the direction information from the provided reaction ID, if unsuccessful we provide the IDs of both directions.

        if getElementById(reactionId, metabMap).map(lambda el : styleMapElement(el, styleStr)).isErr:
            ERRORS.append(reactionId)

    def styleReactionElements(self, metabMap :ET.ElementTree, reactionId :str, *, mindReactionDir = True) -> None:
        if not mindReactionDir:
            if 'r1050' in reactionId:
                print(reactionId)
                print(self.toStyleStr())
            return self.applyTo(getArrowBodyElementId(reactionId), metabMap, self.toStyleStr())
        
        # Now we style the arrow head(s):
        idOpt1, idOpt2 = getArrowHeadElementId(reactionId)
        self.applyTo(idOpt1, metabMap, self.toStyleStr(downSizedForTips = True))