comparison COBRAxy/src/ras_generator.py @ 543:5d5583dc6082 draft

Uploaded

542:fcdbc81feb45

Generate Reaction Activity Scores (RAS) from a gene expression dataset and GPR rules.

The script reads a tabular dataset (genes x samples) and a rules file (GPRs),
computes RAS per reaction for each sample/cell line, and writes a tabular output.
"""
from __future__ import division
import sys
import argparse
import pandas as pd
import numpy as np

543:5d5583dc6082

Generate Reaction Activity Scores (RAS) from a gene expression dataset and GPR rules.

The script reads a tabular dataset (genes x samples) and a rules file (GPRs),
computes RAS per reaction for each sample/cell line, and writes a tabular output.
"""
import os
from __future__ import division
import sys
import argparse
import pandas as pd
import numpy as np