comparison COBRAxy/marea.py @ 278:5e8f1ab4242f draft

Uploaded

277:1bf66a30ab23

    writeToCsv([ [reactId] + values for reactId, values in enrichedScores.items() ], fieldNames, outPath)

def temp_thingsInCommon(tmp :Dict[str, List[Union[float, FoldChange]]], core_map :ET.ElementTree, max_z_score :float, dataset1Name :str, dataset2Name = "rest", ras_enrichment = True) -> None:
    # this function compiles the things always in common between comparison modes after enrichment.
    # TODO: organize, name better.
    writeTabularResult(tmp, ras_enrichment, buildOutputPath(dataset1Name, dataset2Name, details = "Tabular Result", ext = utils.FileFormat.TSV))
    
    if ras_enrichment:
        fix_map(tmp, core_map, ARGS.pValue, ARGS.fChange, max_z_score)
        return

278:5e8f1ab4242f

    writeToCsv([ [reactId] + values for reactId, values in enrichedScores.items() ], fieldNames, outPath)

def temp_thingsInCommon(tmp :Dict[str, List[Union[float, FoldChange]]], core_map :ET.ElementTree, max_z_score :float, dataset1Name :str, dataset2Name = "rest", ras_enrichment = True) -> None:
    # this function compiles the things always in common between comparison modes after enrichment.
    # TODO: organize, name better.
    suffix = "RAS" if ras_enrichment else "RPS"
    details = f"Tabular Result ({suffix})"

    writeTabularResult(tmp, ras_enrichment, buildOutputPath(dataset1Name, dataset2Name, details = details, ext = utils.FileFormat.TSV))
    
    if ras_enrichment:
        fix_map(tmp, core_map, ARGS.pValue, ARGS.fChange, max_z_score)
        return