comparison COBRAxy/ras_to_bounds.py @ 124:67a79e4f037a draft

Uploaded

123:258ff4208e52

    Returns:
        pd.DataFrame: DataFrame containing the bounds of reactions in the model.
    """
    rxns_ids = [rxn.id for rxn in model.reactions]
    
    # Set medium conditions
    for reaction, value in medium.items():
        if value is not None:
            ## SOLO ENGRO2

124:67a79e4f037a

    Returns:
        pd.DataFrame: DataFrame containing the bounds of reactions in the model.
    """
    rxns_ids = [rxn.id for rxn in model.reactions]

    #metto a zero medium engro2
    for rxn_id, _ in model.medium:
        model.reactions.get_by_id(rxn_id).lower_bound = float(0.0)
    
    # Set medium conditions
    for reaction, value in medium.items():
        if value is not None:
            ## SOLO ENGRO2