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comparison COBRAxy/ras_to_bounds.py @ 117:69190617d1ea draft

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Uploaded
author luca_milaz
date Sun, 13 Oct 2024 16:27:27 +0000
parents 734cc52537da
children 6e1a6e480969
comparison
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116:734cc52537da 117:69190617d1ea
176 176
177 Returns: 177 Returns:
178 pd.DataFrame: DataFrame containing the bounds of reactions in the model. 178 pd.DataFrame: DataFrame containing the bounds of reactions in the model.
179 """ 179 """
180 rxns_ids = [rxn.id for rxn in model.reactions] 180 rxns_ids = [rxn.id for rxn in model.reactions]
181
182 warning(str(model.reactions.get_by_id("EX_Lcystin_e").lower_bound))
183 warning(str(model.reactions.get_by_id("EX_Lcystin_e").upper_bound))
181 184
182 # Set medium conditions 185 # Set medium conditions
183 for reaction, value in medium.items(): 186 for reaction, value in medium.items():
184 if value is not None: 187 if value is not None:
185 if(reaction != "EX_thbpt_e" and reaction != "EX_lac__L_e"): 188 if(reaction != "EX_thbpt_e" and reaction != "EX_lac__L_e"):