comparison COBRAxy/metabolicModel2Tabular.py @ 528:698802db290d draft

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527:a9191eb88e69

    # Determine final model name: explicit --name overrides, otherwise use the model id
    
    if ARGS.name == "ENGRO2" and ARGS.medium_selector != "Default":
        df_mediums = pd.read_csv(ARGS.tool_dir + "/local/medium/medium.csv", index_col = 0)
        ARGS.medium_selector = ARGS.medium_selector.replace("_", " ")
        medium = df_mediums[[ARGS.medium_selector]]
        medium = medium[ARGS.medium_selector].to_dict()

        # Reset all medium reactions lower bound to zero
        for rxn_id, _ in model.medium.items():

528:698802db290d

    # Determine final model name: explicit --name overrides, otherwise use the model id
    
    if ARGS.name == "ENGRO2" and ARGS.medium_selector != "Default":
        df_mediums = pd.read_csv(ARGS.tool_dir + "/local/medium/medium.csv", index_col = 0)
        #ARGS.medium_selector = ARGS.medium_selector.replace("_", " ") medium.csv uses underscores now
        medium = df_mediums[[ARGS.medium_selector]]
        medium = medium[ARGS.medium_selector].to_dict()

        # Reset all medium reactions lower bound to zero
        for rxn_id, _ in model.medium.items():