comparison COBRAxy/ras_generator.py @ 401:6c7ddf68381a draft

Uploaded

400:e94735cb40fa

    #    filenamePath = None
     
    #if filenamePath.ext is utils.FileFormat.PICKLE: return utils.readPickle(datFilePath)

    dict_rule = {}
    for line in utils.readCsv(datFilePath, delimiter = "\t"):
        if line[2] == "":
            dict_rule[line[0]] = ruleUtils.OpList([""])
        else:
            dict_rule[line[0]] = ruleUtils.parseRuleToNestedList(line[2])

    # csv rules need to be parsed, those in a pickle format are taken to be pre-parsed.
    return dict_rule

def main(args:List[str] = None) -> None:
    """
    Initializes everything and sets the program in motion based on the fronted input arguments.
    

401:6c7ddf68381a

    #    filenamePath = None
     
    #if filenamePath.ext is utils.FileFormat.PICKLE: return utils.readPickle(datFilePath)

    dict_rule = {}

    try:
        # Proviamo prima con delimitatore tab
        for line in utils.readCsv(datFilePath, delimiter = "\t"):
            if len(line) < 3:  # Controlliamo che ci siano almeno 3 colonne
                utils.logWarning(f"Skipping malformed line: {line}", ARGS.out_log)
                continue
            
            if line[2] == "":
                dict_rule[line[0]] = ruleUtils.OpList([""])
            else:
                dict_rule[line[0]] = ruleUtils.parseRuleToNestedList(line[2])
                
    except Exception as e:
        # Se fallisce con tab, proviamo con virgola
        try:
            dict_rule = {}
            for line in utils.readCsv(datFilePath, delimiter = ","):
                if len(line) < 3:
                    utils.logWarning(f"Skipping malformed line: {line}", ARGS.out_log)
                    continue
                
                if line[2] == "":
                    dict_rule[line[0]] = ruleUtils.OpList([""])
                else:
                    dict_rule[line[0]] = ruleUtils.parseRuleToNestedList(line[2])
        except Exception as e2:
            raise ValueError(f"Unable to parse rules file. Tried both tab and comma delimiters. Original errors: Tab: {e}, Comma: {e2}")

    if not dict_rule:
            raise ValueError("No valid rules found in the uploaded file. Please check the file format.")
    # csv rules need to be parsed, those in a pickle format are taken to be pre-parsed.
    return dict_rule


def main(args:List[str] = None) -> None:
    """
    Initializes everything and sets the program in motion based on the fronted input arguments.