Mercurial > repos > bimib > cobraxy

comparison COBRAxy/custom_data_generator.py @ 25:80bfd8743ea6 draft

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Uploaded
author luca_milaz
date Thu, 19 Sep 2024 08:06:59 +0000
parents 20c30b1a032d
children 4c9ade74c4d7
comparison
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24:c5dbdbb64cef 25:80bfd8743ea6
186 rules = generate_rules(model, asParsed = False) 186 rules = generate_rules(model, asParsed = False)
187 reactions = generate_reactions(model, asParsed = False) 187 reactions = generate_reactions(model, asParsed = False)
188 bounds = generate_bounds(model) 188 bounds = generate_bounds(model)
189 medium = get_medium(model) 189 medium = get_medium(model)
190 190
191 rulesPath = utils.FilePath("rules", "csv") 191
192 reactionsPath = utils.FilePath("reactions", "csv") 192 save_as_csv(rules, ARGS.out_rules, ("ReactionID", "Rule"))
193 boundsPath = utils.FilePath("bounds", "csv") 193 save_as_csv(reactions, ARGS.out_reactions, ("ReactionID", "Reaction"))
194 mediumPath = utils.FilePath("medium", "csv") 194 bounds.to_csv(ARGS.out_bounds, sep = '\t')
195 195 medium.to_csv(ARGS.out_medium, sep = '\t')
196 save_as_csv(rules, rulesPath, ("ReactionID", "Rule"))
197 save_as_csv(reactions, reactionsPath, ("ReactionID", "Reaction"))
198 bounds.to_csv(boundsPath.show(), sep = '\t')
199 medium.to_csv(mediumPath.show(), sep = '\t')
200 196
201 197
202 # ^ Please if anyone works on this after updating python to 3.12 change the if/elif into a match statement!! 198 # ^ Please if anyone works on this after updating python to 3.12 change the if/elif into a match statement!!
203 199
204 if __name__ == '__main__': 200 if __name__ == '__main__':