comparison COBRAxy/marea.py @ 146:88cf4543e210 draft

Uploaded

145:0f5564819296

import copy

ERRORS = []
########################## argparse ##########################################
ARGS :argparse.Namespace
def process_args() -> argparse.Namespace:
    """
    Interfaces the script of a module with its frontend, making the user's choices for various parameters available as values in code.

    Args:
        args : Always obtained (in file) from sys.argv

        '-cm', '--custom_map',
        type = str,
        help='custom map to use')
    
    parser.add_argument(
        '-mc',  '--choice_map',
        type = utils.Model, default = utils.Model.HMRcore,
        choices = [utils.Model.HMRcore, utils.Model.ENGRO2, utils.Model.Custom])

    args :argparse.Namespace = parser.parse_args()
    if args.using_RAS and not args.using_RPS: args.net = False

    return args
          
############################ dataset input ####################################

        f"{dataset1Name}_vs_{dataset2Name}" + (f" ({details})" if details else ""),
        # ^^^ yes this string is built every time even if the form is the same for the same 2 datasets in
        # all output files: I don't care, this was never the performance bottleneck of the tool and
        # there is no other net gain in saving and re-using the built string.
        ext,
        prefix = "result")

FIELD_NOT_AVAILABLE = '/'
def writeToCsv(rows: List[list], fieldNames :List[str], outPath :utils.FilePath) -> None:
    fieldsAmt = len(fieldNames)
    with open(outPath.show(), "w", newline = "") as fd:

    dataset = dataset.drop(dataset.columns[0], axis = "columns").to_dict("list")
    return { id : list(map(utils.Float("Dataset values, not an argument"), values)) for id, values in dataset.items() }, IDs

############################ MAIN #############################################
def main() -> None:
    """
    Initializes everything and sets the program in motion based on the fronted input arguments.

    Returns:
        None
    
    Raises:
        sys.exit : if a user-provided custom map is in the wrong format (ET.XMLSyntaxError, ET.XMLSchemaParseError)
    """
    global ARGS
    ARGS = process_args()

    if not os.path.isdir('result'):
        os.makedirs('result')
    
    core_map: ET.ElementTree = ARGS.choice_map.getMap(
        ARGS.tool_dir,
        utils.FilePath.fromStrPath(ARGS.custom_map) if ARGS.custom_map else None)
    

146:88cf4543e210

import copy

ERRORS = []
########################## argparse ##########################################
ARGS :argparse.Namespace
def process_args(args=None) -> argparse.Namespace:
    """
    Interfaces the script of a module with its frontend, making the user's choices for various parameters available as values in code.

    Args:
        args : Always obtained (in file) from sys.argv

        '-cm', '--custom_map',
        type = str,
        help='custom map to use')
    
    parser.add_argument(
        '-idop', '--output_path', 
        type = str,
        default='result',
        help = 'output path for maps')
    
    parser.add_argument(
        '-mc',  '--choice_map',
        type = utils.Model, default = utils.Model.HMRcore,
        choices = [utils.Model.HMRcore, utils.Model.ENGRO2, utils.Model.Custom])

    args :argparse.Namespace = parser.parse_args(args)
    if args.using_RAS and not args.using_RPS: args.net = False

    return args
          
############################ dataset input ####################################

        f"{dataset1Name}_vs_{dataset2Name}" + (f" ({details})" if details else ""),
        # ^^^ yes this string is built every time even if the form is the same for the same 2 datasets in
        # all output files: I don't care, this was never the performance bottleneck of the tool and
        # there is no other net gain in saving and re-using the built string.
        ext,
        prefix = ARGS.output_path)

FIELD_NOT_AVAILABLE = '/'
def writeToCsv(rows: List[list], fieldNames :List[str], outPath :utils.FilePath) -> None:
    fieldsAmt = len(fieldNames)
    with open(outPath.show(), "w", newline = "") as fd:

    dataset = dataset.drop(dataset.columns[0], axis = "columns").to_dict("list")
    return { id : list(map(utils.Float("Dataset values, not an argument"), values)) for id, values in dataset.items() }, IDs

############################ MAIN #############################################
def main(args=None) -> None:
    """
    Initializes everything and sets the program in motion based on the fronted input arguments.

    Returns:
        None
    
    Raises:
        sys.exit : if a user-provided custom map is in the wrong format (ET.XMLSyntaxError, ET.XMLSchemaParseError)
    """
    global ARGS
    ARGS = process_args(args)

    if not os.path.isdir(ARGS.output_path):
        os.makedirs(ARGS.output_path)
    
    core_map: ET.ElementTree = ARGS.choice_map.getMap(
        ARGS.tool_dir,
        utils.FilePath.fromStrPath(ARGS.custom_map) if ARGS.custom_map else None)