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comparison COBRAxy/ras_generator.py @ 45:95d67e76d647 draft

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Uploaded
author bimib
date Tue, 08 Oct 2024 16:57:44 +0000
parents 76924a2fd939
children edc096339f0d
comparison
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44:76924a2fd939 45:95d67e76d647
229 elif args.rules_selector == 'Recon': 229 elif args.rules_selector == 'Recon':
230 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb')) 230 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/Recon_genes.p', 'rb'))
231 231
232 elif args.rules_selector == 'ENGRO2': 232 elif args.rules_selector == 'ENGRO2':
233 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb')) 233 gene_in_rule = pk.load(open(args.tool_dir + '/local/pickle files/ENGRO2_genes.p', 'rb'))
234
235 print(args.rules_selector)
234 gene_in_rule = gene_in_rule.get(type_gene) 236 gene_in_rule = gene_in_rule.get(type_gene)
235 237
236 else: 238 else:
237 gene_in_rule = gene_custom 239 gene_in_rule = gene_custom
238 tmp = [] 240 tmp = []