comparison COBRAxy/ras_to_bounds.py @ 56:9688ad27287b draft

Uploaded

55:f76b1d0b912f

            ras_class_names = [cls.strip() for cls in ARGS.classes.split(',')]
        else:
            ras_class_names = ["placeHolder"]
        ras_list = []
        class_assignments = pd.DataFrame(columns=["Patient_ID", "Class"])
        for ras_matrix, ras_class_name in ras_file_list, ras_class_names:
            ras = read_dataset(ras_matrix, "ras dataset")
            ras.replace("None", None, inplace=True)
            ras.set_index("Reactions", drop=True, inplace=True)
            ras = ras.T
            ras = ras.astype(float)

56:9688ad27287b

            ras_class_names = [cls.strip() for cls in ARGS.classes.split(',')]
        else:
            ras_class_names = ["placeHolder"]
        ras_list = []
        class_assignments = pd.DataFrame(columns=["Patient_ID", "Class"])
        for ras_matrix, ras_class_name in zip(ras_file_list, ras_class_names):
            ras = read_dataset(ras_matrix, "ras dataset")
            ras.replace("None", None, inplace=True)
            ras.set_index("Reactions", drop=True, inplace=True)
            ras = ras.T
            ras = ras.astype(float)