Mercurial > repos > bimib > cobraxy
comparison COBRAxy/ras_to_bounds.py @ 125:a9825d06cc43 draft
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| author | luca_milaz |
|---|---|
| date | Mon, 14 Oct 2024 08:38:46 +0000 |
| parents | 67a79e4f037a |
| children | d40d5d5435df |
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| 124:67a79e4f037a | 125:a9825d06cc43 |
|---|---|
| 173 pd.DataFrame: DataFrame containing the bounds of reactions in the model. | 173 pd.DataFrame: DataFrame containing the bounds of reactions in the model. |
| 174 """ | 174 """ |
| 175 rxns_ids = [rxn.id for rxn in model.reactions] | 175 rxns_ids = [rxn.id for rxn in model.reactions] |
| 176 | 176 |
| 177 #metto a zero medium engro2 | 177 #metto a zero medium engro2 |
| 178 for rxn_id, _ in model.medium: | 178 for rxn_id, _ in model.medium.items(): |
| 179 model.reactions.get_by_id(rxn_id).lower_bound = float(0.0) | 179 model.reactions.get_by_id(rxn_id).lower_bound = float(0.0) |
| 180 | 180 |
| 181 # Set medium conditions | 181 # Set medium conditions |
| 182 for reaction, value in medium.items(): | 182 for reaction, value in medium.items(): |
| 183 if value is not None: | 183 if value is not None: |