Mercurial > repos > bimib > cobraxy

comparison COBRAxy/ras_to_bounds.py @ 76:be82f87848d0 draft

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Uploaded
author luca_milaz
date Sun, 13 Oct 2024 09:30:44 +0000
parents 22c3946713cd
children 0446929eb06b
comparison
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75:7476467061db 76:be82f87848d0
263 medium = df_mediums[[ARGS.medium_selector]] 263 medium = df_mediums[[ARGS.medium_selector]]
264 medium = medium[ARGS.medium_selector].to_dict() 264 medium = medium[ARGS.medium_selector].to_dict()
265 265
266 if(ARGS.ras_selector == True): 266 if(ARGS.ras_selector == True):
267 generate_bounds(model, medium, ras = ras_combined, output_folder=ARGS.output_folder) 267 generate_bounds(model, medium, ras = ras_combined, output_folder=ARGS.output_folder)
268 if(len(ras_list)>1): 268 class_assignments.to_csv(ARGS.cell_class, sep = '\t', index = False)
269 class_assignments.to_csv(ARGS.cell_class, sep = '\t', index = False)
270 else: 269 else:
271 generate_bounds(model, medium, output_folder=ARGS.output_folder) 270 generate_bounds(model, medium, output_folder=ARGS.output_folder)
272 271
273 pass 272 pass
274 273