comparison COBRAxy/custom_data_generator.py @ 356:be93df100d60 draft

Uploaded

355:62de44378930

    ####
    out_data_path = ARGS.out_data

    # If Galaxy provided a .dat name, ensure a correct extension according to output_format
    if ARGS.output_format == "xlsx":
        if not out_data_path.lower().endswith(".xlsx"):
            out_data_path = out_data_path + ".xlsx"
        merged.to_excel(out_data_path, index=False)
    else:
        # 'tabular' -> tab-separated, extension .csv is fine and common for Galaxy tabular
        if not (out_data_path.lower().endswith(".csv") or out_data_path.lower().endswith(".tsv")):
            out_data_path = out_data_path + ".csv"
        merged.to_csv(out_data_path, sep="\t", index=False)

    print(f"Custom data generated for model '{model_name}' and saved to '{out_data_path}'")

if __name__ == '__main__':
    main()

356:be93df100d60

    ####
    out_data_path = ARGS.out_data

    if ARGS.output_format == "xlsx":
        merged.to_excel(out_data_path, index=False)
    else:
        merged.to_csv(out_data_path, sep="\t", index=False)


    print(f"Custom data generated for model '{model_name}' and saved to '{out_data_path}'")

if __name__ == '__main__':
    main()