Mercurial > repos > bimib > cobraxy

comparison COBRAxy/flux_simulation.py @ 334:c561c060a55f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author luca_milaz
date Thu, 04 Sep 2025 12:04:42 +0000
parents 3ca179b83574
children
comparison
equal deleted inserted replaced
333:a7d52bde3efe 334:c561c060a55f
386 model_type :utils.Model = ARGS.model_selector 386 model_type :utils.Model = ARGS.model_selector
387 if model_type is utils.Model.Custom: 387 if model_type is utils.Model.Custom:
388 model = model_type.getCOBRAmodel(customPath = utils.FilePath.fromStrPath(ARGS.model), customExtension = utils.FilePath.fromStrPath(ARGS.model_name).ext) 388 model = model_type.getCOBRAmodel(customPath = utils.FilePath.fromStrPath(ARGS.model), customExtension = utils.FilePath.fromStrPath(ARGS.model_name).ext)
389 else: 389 else:
390 model = model_type.getCOBRAmodel(toolDir=ARGS.tool_dir) 390 model = model_type.getCOBRAmodel(toolDir=ARGS.tool_dir)
391
392 #Set solver verbosity to 1 to see warning and error messages only.
393 model.solver.configuration.verbosity = 1
391 394
392 ARGS.bounds = ARGS.input.split(",") 395 ARGS.bounds = ARGS.input.split(",")
393 ARGS.bounds_name = ARGS.names.split(",") 396 ARGS.bounds_name = ARGS.names.split(",")
394 ARGS.output_types = ARGS.output_type.split(",") 397 ARGS.output_types = ARGS.output_type.split(",")
395 ARGS.output_type_analysis = ARGS.output_type_analysis.split(",") 398 ARGS.output_type_analysis = ARGS.output_type_analysis.split(",")