comparison COBRAxy/custom_data_generator.py @ 361:ca5d82f9075f draft

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360:6ab85843c255

    # get args from frontend (related xml)
    global ARGS
    ARGS = process_args(args)

    # this is the worst thing I've seen so far, congrats to the former MaREA devs for suggesting this!
    if os.path.isdir(ARGS.output_path) == False: 
        os.makedirs(ARGS.output_path)

    if ARGS.input:
        # load custom model
        model = load_custom_model(
            utils.FilePath.fromStrPath(ARGS.input), utils.FilePath.fromStrPath(ARGS.name).ext)

    #merged.to_csv(out_file, sep = '\t', index = False)


    ####
    out_data_path = ARGS.output_path

    if ARGS.output_format == "xlsx":
        merged.to_excel(out_data_path, index=False)
    else:
        merged.to_csv(out_data_path, sep="\t", index=False)


    print(f"Custom data generated for model '{model_name}' and saved to '{out_data_path}'")

if __name__ == '__main__':
    main()

361:ca5d82f9075f

    # get args from frontend (related xml)
    global ARGS
    ARGS = process_args(args)

    # this is the worst thing I've seen so far, congrats to the former MaREA devs for suggesting this!
    #if os.path.isdir(ARGS.output_path) == False: 
    #    os.makedirs(ARGS.output_path)

    if ARGS.input:
        # load custom model
        model = load_custom_model(
            utils.FilePath.fromStrPath(ARGS.input), utils.FilePath.fromStrPath(ARGS.name).ext)

    #merged.to_csv(out_file, sep = '\t', index = False)


    ####
    out_data_path = ARGS.output_path  # Galaxy provides a filepath

    if ARGS.output_format == "xlsx":
        merged.to_excel(out_data_path, index=False)
    else:
        merged.to_csv(out_data_path, sep="\t", index=False)

    print(f"Custom data generated for model '{model_name}' and saved to '{out_data_path}'")


if __name__ == '__main__':
    main()