Mercurial > repos > bimib > cobraxy

comparison COBRAxy/ras_to_bounds.py @ 104:d4d84b2bce9b draft

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Uploaded
author luca_milaz
date Sun, 13 Oct 2024 13:42:22 +0000
parents d1370b6bb4c5
children e3b3958c0d88
comparison
equal deleted inserted replaced
103:d1370b6bb4c5 104:d4d84b2bce9b
152 152
153 Returns: 153 Returns:
154 None 154 None
155 """ 155 """
156 model_new = model.copy() 156 model_new = model.copy()
157 warning(ras_row.index) 157 warning(str(ras_row.index))
158 apply_ras_bounds(model_new, ras_row, rxns_ids) 158 apply_ras_bounds(model_new, ras_row, rxns_ids)
159 bounds = pd.DataFrame([(rxn.lower_bound, rxn.upper_bound) for rxn in model_new.reactions], index=rxns_ids, columns=["lower_bound", "upper_bound"]) 159 bounds = pd.DataFrame([(rxn.lower_bound, rxn.upper_bound) for rxn in model_new.reactions], index=rxns_ids, columns=["lower_bound", "upper_bound"])
160 bounds.to_csv(output_folder + cellName + ".csv", sep='\t', index=True) 160 bounds.to_csv(output_folder + cellName + ".csv", sep='\t', index=True)
161 pass 161 pass
162 162