Mercurial > repos > bimib > cobraxy
comparison COBRAxy/metabolicModel2Tabular.py @ 495:e19083971cc3 draft
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| author | francesco_lapi |
|---|---|
| date | Tue, 30 Sep 2025 15:17:55 +0000 |
| parents | 5397559097dc |
| children | 6c973150937b |
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| 494:5397559097dc | 495:e19083971cc3 |
|---|---|
| 186 # Load a custom model from file | 186 # Load a custom model from file |
| 187 model = load_custom_model( | 187 model = load_custom_model( |
| 188 utils.FilePath.fromStrPath(ARGS.input), utils.FilePath.fromStrPath(ARGS.name).ext) | 188 utils.FilePath.fromStrPath(ARGS.input), utils.FilePath.fromStrPath(ARGS.name).ext) |
| 189 else: | 189 else: |
| 190 # Load a built-in model | 190 # Load a built-in model |
| 191 if not ARGS.model: | |
| 192 raise utils.ArgsErr("model", "either --model or --input must be provided", "None") | |
| 191 | 193 |
| 192 try: | 194 try: |
| 193 model_enum = utils.Model[ARGS.model] # e.g., Model['ENGRO2'] | 195 model_enum = utils.Model[ARGS.model] # e.g., Model['ENGRO2'] |
| 194 except KeyError: | 196 except KeyError: |
| 195 raise utils.ArgsErr("model", "one of Recon/ENGRO2/HMRcore/Custom_model", ARGS.model) | 197 raise utils.ArgsErr("model", "one of Recon/ENGRO2/HMRcore/Custom_model", ARGS.model) |