Mercurial > repos > bimib > cobraxy

comparison COBRAxy/marea.py @ 322:f62b8625f6f1 draft

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author francesco_lapi
date Wed, 18 Jun 2025 13:42:05 +0000
parents 4628889348bf
children a6e45049c1b9
comparison
equal deleted inserted replaced
321:a9d6e916ea6e 322:f62b8625f6f1
919 controlItems = class_pat.get(ARGS.control) 919 controlItems = class_pat.get(ARGS.control)
920 for otherDataset in class_pat.keys(): 920 for otherDataset in class_pat.keys():
921 if otherDataset == ARGS.control: 921 if otherDataset == ARGS.control:
922 continue 922 continue
923 923
924 comparisonDict, max_z_score, netRPS = compareDatasetPair(controlItems, class_pat.get(otherDataset), ids) 924 #comparisonDict, max_z_score, netRPS = compareDatasetPair(controlItems, class_pat.get(otherDataset), ids)
925 enrichment_results.append((ARGS.control, otherDataset, comparisonDict, max_z_score)) 925 comparisonDict, max_z_score, netRPS = compareDatasetPair(class_pat.get(otherDataset),controlItems, ids)
926 netRPSResults[ARGS.control] = { reactId : net[0] for reactId, net in netRPS.items() } 926 #enrichment_results.append((ARGS.control, otherDataset, comparisonDict, max_z_score))
927 netRPSResults[otherDataset] = { reactId : net[1] for reactId, net in netRPS.items() } 927 enrichment_results.append(( otherDataset,ARGS.control, comparisonDict, max_z_score))
928 netRPSResults[otherDataset] = { reactId : net[0] for reactId, net in netRPS.items() }
929 netRPSResults[ARGS.control] = { reactId : net[1] for reactId, net in netRPS.items() }
928 930
929 return enrichment_results, netRPSResults 931 return enrichment_results, netRPSResults
930 932
931 def createOutputMaps(dataset1Name: str, dataset2Name: str, core_map: ET.ElementTree) -> None: 933 def createOutputMaps(dataset1Name: str, dataset2Name: str, core_map: ET.ElementTree) -> None:
932 svgFilePath = buildOutputPath(dataset1Name, dataset2Name, details="SVG Map", ext=utils.FileFormat.SVG) 934 svgFilePath = buildOutputPath(dataset1Name, dataset2Name, details="SVG Map", ext=utils.FileFormat.SVG)