comparison COBRAxy/src/ras_generator.py @ 542:fcdbc81feb45 draft

Uploaded

541:fa93040a75af

from __future__ import division
import sys
import argparse
import pandas as pd
import numpy as np
import utils.general_utils as utils
from typing import List, Dict
import ast

# Optional imports for AnnData mode (not used in ras_generator.py)
try:

        help = 'compute Nan values')
    
    parser.add_argument(
        '-td', '--tool_dir',
        type = str,
        required = True, help = 'your tool directory')
    
    parser.add_argument(
        '-ol', '--out_log',
        type = str,
        help = "Output log")    

542:fcdbc81feb45

from __future__ import division
import sys
import argparse
import pandas as pd
import numpy as np
try:
    from .utils import general_utils as utils
except:
    import utils.general_utils as utils
from typing import List, Dict
import ast

# Optional imports for AnnData mode (not used in ras_generator.py)
try:

        help = 'compute Nan values')
    
    parser.add_argument(
        '-td', '--tool_dir',
        type = str,
        default = os.path.dirname(os.path.abspath(__file__)),
        help = 'your tool directory (default: auto-detected package location)')
    
    parser.add_argument(
        '-ol', '--out_log',
        type = str,
        help = "Output log")