comparison COBRAxy/src/utils/model_utils.py @ 542:fcdbc81feb45 draft

Uploaded

541:fa93040a75af

import pandas as pd
import re
import logging
from typing import Optional, Tuple, Union, List, Dict, Set
from collections import defaultdict
import utils.rule_parsing  as rulesUtils
import utils.reaction_parsing as reactionUtils
from cobra import Model as cobraModel, Reaction, Metabolite
import sys


############################ check_methods ####################################
def gene_type(l :str, name :str) -> str:
    """

542:fcdbc81feb45

import pandas as pd
import re
import logging
from typing import Optional, Tuple, Union, List, Dict, Set
from collections import defaultdict
from cobra import Model as cobraModel, Reaction, Metabolite
import sys

try:
    from . import rule_parsing as rulesUtils
    from . import reaction_parsing as reactionUtils
except:
    import rule_parsing as rulesUtils
    import reaction_parsing as reactionUtils


############################ check_methods ####################################
def gene_type(l :str, name :str) -> str:
    """