comparison COBRAxy/src/utils/reaction_parsing.py @ 542:fcdbc81feb45 draft

Uploaded

541:fa93040a75af

- Parsing of custom reaction strings into stoichiometric maps
- Conversion of a dict of raw reactions into a directional reactions dict
- Loading custom reactions from a tabular file (TSV)
"""
from enum import Enum
import utils.general_utils as utils
from typing import Dict
import re

# Reaction direction encoding:
class ReactionDir(Enum):
  """
  A reaction can go forward, backward, or be reversible (both directions).

542:fcdbc81feb45

- Parsing of custom reaction strings into stoichiometric maps
- Conversion of a dict of raw reactions into a directional reactions dict
- Loading custom reactions from a tabular file (TSV)
"""
from enum import Enum
from typing import Dict
import re

try:
    from . import general_utils as utils
except:
    import general_utils as utils

# Reaction direction encoding:
class ReactionDir(Enum):
  """
  A reaction can go forward, backward, or be reversible (both directions).