comparison COBRAxy/custom_data_generator.py @ 397:de4a373e338b draft default tip

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396:dab29c3a5281

            if value is not None:
                model.reactions.get_by_id(reaction).lower_bound = -float(value)

    if ARGS.name == "ENGRO2" and ARGS.gene_format != "Default":

        model = utils.convert_genes(model, ARGS.gene_format.replace(" ", "_"))

    # generate data
    rules = generate_rules(model, asParsed = False)
    reactions = generate_reactions(model, asParsed = False)
    bounds = generate_bounds(model)

397:de4a373e338b

            if value is not None:
                model.reactions.get_by_id(reaction).lower_bound = -float(value)

    if ARGS.name == "ENGRO2" and ARGS.gene_format != "Default":

        model = utils.convert_genes(model, ARGS.gene_format.replace("HGNC_", "HGNC "))

    # generate data
    rules = generate_rules(model, asParsed = False)
    reactions = generate_reactions(model, asParsed = False)
    bounds = generate_bounds(model)