comparison COBRAxy/utils/model_utils.py @ 538:fd53d42348bd draft default tip

Uploaded

537:f79250e824b5

    Args:
        l (str): The gene identifier to check.
        name (str): The name of the dataset, used in error messages.

    Returns:
        str: The type of gene ID ('hugo_id', 'ensembl_gene_id', 'symbol', or 'entrez_id').

    Raises:
        sys.exit: If the gene ID type is not supported, the execution is aborted.
    """
    if check_hgnc(l):
        return 'hugo_id'
    elif check_ensembl(l):
        return 'ensembl_gene_id'
    elif check_symbol(l):
        return 'symbol'
    elif check_entrez(l):
        return 'entrez_id'
    else:
        sys.exit('Execution aborted:\n' +
                 'gene ID type in ' + name + ' not supported. Supported ID'+

538:fd53d42348bd

    Args:
        l (str): The gene identifier to check.
        name (str): The name of the dataset, used in error messages.

    Returns:
        str: The type of gene ID ('HGNC_ID', 'ENSG', 'HGNC_symbol', or 'entrez_id').

    Raises:
        sys.exit: If the gene ID type is not supported, the execution is aborted.
    """
    if check_hgnc(l):
        return 'HGNC_ID'
    elif check_ensembl(l):
        return 'ENSG'
    elif check_symbol(l):
        return 'HGNC_symbol'
    elif check_entrez(l):
        return 'entrez_id'
    else:
        sys.exit('Execution aborted:\n' +
                 'gene ID type in ' + name + ' not supported. Supported ID'+