Mercurial > repos > bimib > cobraxy

diff COBRAxy/custom_data_generator.xml @ 404:08f1ff359397 draft

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Uploaded
author francesco_lapi
date Mon, 08 Sep 2025 13:50:08 +0000
parents dab29c3a5281
children 716b1a638fb5
line wrap: on
line diff
--- a/COBRAxy/custom_data_generator.xml	Mon Sep 08 13:38:59 2025 +0000
+++ b/COBRAxy/custom_data_generator.xml	Mon Sep 08 13:50:08 2025 +0000
@@ -40,6 +40,14 @@
                 <conditional name="cond_medium">
                     <expand macro="options_ras_to_bounds_medium"/>
                 </conditional>
+
+                <param name="gene_format" argument="--gene_format" type="select" label="Gene nomenclature format:">
+                    <option value="Default" selected="true">Keep original gene nomenclature</option>
+                    <option value="ENSG">ENSNG (Ensembl Gene ID)</option>
+                    <option value="HGNC_symbol">HGNC Symbol</option>
+                    <option value="HGNC_ID">HGNC ID</option>
+                    <option value="entrez_id">Entrez Gene ID</option>
+                </param>
             </when>
 
             <!-- Recon -->
@@ -53,6 +61,9 @@
                         <!-- Nessun parametro aggiuntivo necessario -->
                     </when>
                 </conditional>
+                <param name="gene_format" argument="--gene_format" type="select" label="Gene nomenclature format:">
+                    <option value="Default" selected="true">Keep original gene nomenclature</option>
+                </param>
             </when>
 
             <!-- Custom model -->
@@ -67,16 +78,12 @@
                         <!-- Nessun parametro aggiuntivo necessario -->
                     </when>
                 </conditional>
+                <param name="gene_format" argument="--gene_format" type="select" label="Gene nomenclature format:">
+                    <option value="Default" selected="true">Keep original gene nomenclature</option>
+                </param>
             </when>
         </conditional>
 
-        <param name="gene_format" argument="--gene_format" type="select" label="Gene nomenclature format:">
-            <option value="Default" selected="true">Keep original gene nomenclature</option>
-            <option value="ENSG">ENSNG (Ensembl Gene ID)</option>
-            <option value="HGNC_symbol">HGNC Symbol</option>
-            <option value="HGNC_ID">HGNC ID</option>
-            <option value="entrez_id">Entrez Gene ID</option>
-        </param>
     </inputs>
 
     <outputs>